Detection of large scale 3' deletions in the PMS2 gene amongst Colon-CFR participants: have we been missing anything?

Fam Cancer. 2013 Sep;12(3):563-6. doi: 10.1007/s10689-012-9597-4.

Abstract

Current screening practices have been able to identify PMS2 mutations in 78 % of cases of colorectal cancer from the Colorectal Cancer Family Registry (Colon CFR) which showed solitary loss of the PMS2 protein. However the detection of large-scale deletions in the 3' end of the PMS2 gene has not been possible due to technical difficulties associated with pseudogene sequences. Here, we utilised a recently described MLPA/long-range PCR-based approach to screen the remaining 22 % (n = 16) of CRC-affected probands for mutations in the 3' end of the PMS2 gene. No deletions encompassing any or all of exons 12 through 15 were identified; therefore, our results suggest that 3' deletions in PMS2 are not a frequent occurrence in such families.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • 3' Untranslated Regions / genetics*
  • Adenosine Triphosphatases / genetics*
  • Colonic Neoplasms / diagnosis
  • Colonic Neoplasms / genetics*
  • DNA / genetics
  • DNA Repair Enzymes / genetics*
  • DNA-Binding Proteins / genetics*
  • Family
  • Female
  • Gene Deletion*
  • Humans
  • Male
  • Mismatch Repair Endonuclease PMS2
  • Polymerase Chain Reaction
  • Prognosis
  • Registries

Substances

  • 3' Untranslated Regions
  • DNA-Binding Proteins
  • DNA
  • Adenosine Triphosphatases
  • PMS2 protein, human
  • Mismatch Repair Endonuclease PMS2
  • DNA Repair Enzymes