Identification of positive and negative regulatory elements governing cell-type-specific expression of the neural cell adhesion molecule gene

Mol Cell Biol. 1990 May;10(5):1959-68. doi: 10.1128/mcb.10.5.1959-1968.1990.

Abstract

The neural cell adhesion molecule (NCAM) is one of the most prevalent cell adhesion molecules in vertebrates. Its expression is subject to complex cell-type- and developmental-stage-dependent regulation. To study this regulation at the level of transcription, we analyzed the promoter region of the mouse NCAM gene. The NCAM promoter did not contain a typical TATA box. Transcription started at several sites that were used indiscriminately by different cell types, implying that the different NCAM isoforms are expressed from a single promoter. Sequences responsible for both promotion and inhibition of transcription resided within 840 base pairs upstream of the main transcriptional start site. The sequence from positions -645 to -37 relative to the translation initiation site directed high levels of expression in NCAM-expressing N2A cells. The same fragment was six times less active but still significantly active in L cells, but this activity was repressed by inclusion of an additional upstream segment. We mapped eight domains of interactions with nuclear proteins within the 840-base-pair region. The segment with maximum promoter activity contained two adjacent footprints, the occupation of which appeared to be mutually exclusive. One of them corresponded to an Sp1-factor-binding consensus site, the other one bound a factor with nuclear factor I activity. The single protected domain in the fragment harboring a repressor activity consisted of a GGA repeat resembling negative regulatory elements in other promoters. Three adjacent binding sites occupied an A + T-rich segment and contained ATTA motifs also found in the recognition elements of homeodomain proteins. These results show that negative and positive elements interact to regulate the tissue-specific patterns of expression of the NCAM gene and indicate that a factor related to nuclear factor I is involved in its transcriptional control.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cell Adhesion Molecules, Neuronal / genetics*
  • Cell Nucleus / physiology
  • Cloning, Molecular
  • Deoxyribonuclease I / pharmacology
  • Gene Expression Regulation
  • In Vitro Techniques
  • Mice
  • Molecular Sequence Data
  • Promoter Regions, Genetic*
  • Regulatory Sequences, Nucleic Acid*
  • Restriction Mapping
  • Transcription, Genetic

Substances

  • Cell Adhesion Molecules, Neuronal
  • Deoxyribonuclease I