Microbulbifer mangrovi sp. nov., a polysaccharide-degrading bacterium isolated from an Indian mangrove

Int J Syst Evol Microbiol. 2013 Jul;63(Pt 7):2532-2537. doi: 10.1099/ijs.0.042978-0. Epub 2012 Dec 14.

Abstract

A rod-shaped, Gram-negative, non-motile, aerobic and non-endospore forming bacterium, designated strain DD-13(T), was isolated from the mangrove ecosystem of Goa, India. Strain DD-13(T) degraded polysaccharides such as agar, alginate, chitin, cellulose, laminarin, pectin, pullulan, starch, carrageenan, xylan and β-glucan. The optimum pH and temperature for growth was 7 and 36 °C, respectively. The strain grew optimally in the presence of 3 % NaCl (w/v). The DNA G+C content was 61.4 mol%. The predominant fatty acid of strain DD-13(T) was iso-C15 : 0. Ubiquinone-8 was detected as the major respiratory lipoquinone. Phylogenetic studies based on 16S rRNA gene sequence analysis demonstrated that strain DD-13(T) formed a coherent cluster with species of the genus Microbulbifer. Strain DD-13(T) exhibited 16S rRNA gene sequence similarity levels of 98.9-97.1 % with Microbulbifer hydrolyticus IRE-31(T), Microbulbifer salipaludis JCM 11542(T), Microbulbifer agarilyticus JAMB A3(T), Microbulbifer celer KCTC 12973(T) and Microbulbifer elongatus DSM 6810(T). However, the level of DNA-DNA relatedness between strain DD-13(T) and the five type strains of these species of the genus Microbulbifer were in the range of 26-33 %. Additionally, strain DD-13(T) demonstrates several phenotypic differences from these type strains of species of the genus Microbulbifer. Thus strain DD-13(T) represents a novel species of the genus Microbulbifer, for which the name Microbulbifer mangrovi sp. nov. is proposed with the type strain DD-13(T) ( = KCTC 23483(T) = JCM 17729(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alteromonadaceae / classification*
  • Alteromonadaceae / genetics
  • Alteromonadaceae / isolation & purification
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Geologic Sediments / microbiology
  • India
  • Molecular Sequence Data
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Ubiquinone / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • ubiquinone 8

Associated data

  • GENBANK/HQ424446