Finding falls in ambulatory care clinical documents using statistical text mining

J Am Med Inform Assoc. 2013 Sep-Oct;20(5):906-14. doi: 10.1136/amiajnl-2012-001334. Epub 2012 Dec 15.

Abstract

Objective: To determine how well statistical text mining (STM) models can identify falls within clinical text associated with an ambulatory encounter.

Materials and methods: 2241 patients were selected with a fall-related ICD-9-CM E-code or matched injury diagnosis code while being treated as an outpatient at one of four sites within the Veterans Health Administration. All clinical documents within a 48-h window of the recorded E-code or injury diagnosis code for each patient were obtained (n=26 010; 611 distinct document titles) and annotated for falls. Logistic regression, support vector machine, and cost-sensitive support vector machine (SVM-cost) models were trained on a stratified sample of 70% of documents from one location (dataset Atrain) and then applied to the remaining unseen documents (datasets Atest-D).

Results: All three STM models obtained area under the receiver operating characteristic curve (AUC) scores above 0.950 on the four test datasets (Atest-D). The SVM-cost model obtained the highest AUC scores, ranging from 0.953 to 0.978. The SVM-cost model also achieved F-measure values ranging from 0.745 to 0.853, sensitivity from 0.890 to 0.931, and specificity from 0.877 to 0.944.

Discussion: The STM models performed well across a large heterogeneous collection of document titles. In addition, the models also generalized across other sites, including a traditionally bilingual site that had distinctly different grammatical patterns.

Conclusions: The results of this study suggest STM-based models have the potential to improve surveillance of falls. Furthermore, the encouraging evidence shown here that STM is a robust technique for mining clinical documents bodes well for other surveillance-related topics.

Keywords: Accidental Falls; Ambulatory Care; Electronic Health Records; Text Mining.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Accidental Falls / statistics & numerical data*
  • Ambulatory Care
  • Ambulatory Care Information Systems*
  • Area Under Curve
  • Data Mining*
  • Electronic Health Records*
  • Humans
  • Logistic Models
  • Models, Statistical*
  • Support Vector Machine