Erythrobacter westpacificensis sp. nov., a marine bacterium isolated from the Western Pacific

Curr Microbiol. 2013 Apr;66(4):385-90. doi: 10.1007/s00284-012-0287-0. Epub 2012 Dec 15.

Abstract

A novel Gram-negative, orange-pigmented bacterial strain JLT2008(T) was isolated from the surface seawater of the Western Pacific and subjected to a polyphasic taxonomic study. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain JLT2008(T) belonged to the genus Erythrobacter, sharing the highest similarity (96.6 %) with Erythrobacter gangjinensis K7-2(T) and the lowest similarity (94.9 %) with Erythrobacter litoralis DSM 8509(T). Strain JLT2008(T) did not contain bacteriochlorophyll a, and the predominant respiratory lipoquinone was ubiquinone-10. The major fatty acids were C(18:1) ω7c, C(16:0), C(16:1) ω7c/C(16:1) ω6c. The prominent polar lipids were sphingoglycolipid, phosphatidylethanolamine, and phosphatidylglycerol. The genomic G + C content was 60.1 mol %. Based on the polyphasic taxonomic data, a novel species within the genus Erythrobacter, and with the name Erythrobacter westpacificensis sp. nov., is proposed. The type strain is JLT2008(T) (=CGMCC 1.10993(T) = JCM 18014(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cluster Analysis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Fatty Acids / analysis
  • Microscopy, Electron, Transmission
  • Molecular Sequence Data
  • Pacific Ocean
  • Phospholipids / analysis
  • Phylogeny
  • Pigments, Biological
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Sphingomonadaceae / chemistry
  • Sphingomonadaceae / classification*
  • Sphingomonadaceae / genetics
  • Sphingomonadaceae / isolation & purification*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Phospholipids
  • Pigments, Biological
  • Quinones
  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/JN164701