Softened electrostatic molecular potentials

J Mol Graph Model. 2013 Feb:39:39-49. doi: 10.1016/j.jmgm.2012.10.006. Epub 2012 Nov 2.

Abstract

Electrostatic molecular potentials (EMPs) are studied from two points of view. First, a softened EMP (SEMP) approach is proposed, consisting in the substitution of a positive point charge as the entity with which an electronic density function (DF) interacts electrostatically to generate a classical EMP for a Gaussian charge distribution. Second, the performance of this SEMP approach under the Atomic Shell Approximation (ASA) is described and compared with classical EMP at the same ASA level. Several sample applications are presented to describe the general features of this new method of studying electrostatic interactions in molecules. The net result is a family of SEMPs that encompass EMPs as special cases but do not possess their infinite discontinuities. The features of SEMPs are quite similar to those of EMPs distant from nuclei, and the absence of infinity values makes them good candidates to be employed in molecular similarity calculations.

MeSH terms

  • Algorithms
  • Models, Theoretical*
  • Static Electricity*