Evaluation of the genetic diversity of avian paramyxovirus type 4

Virus Res. 2013 Jan;171(1):103-10. doi: 10.1016/j.virusres.2012.10.031. Epub 2012 Nov 21.

Abstract

Avian paramyxoviruses (APMVs) belong to the genus Avulavirus in the family Paramyxoviridae and include at least nine serotypes, APMV-1 to -9, as well as two additional provisional serotypes. Newcastle disease virus (NDV), which comprises APMV-1, is the most extensively studied APMV because it is an important poultry pathogen. A moderate level of antigenic and genetic diversity is recognized for APMV-1 isolates, but our knowledge of the antigenic and genetic diversity of the other APMV serotypes is limited. APMV-4 is frequently isolated from waterfowl around the world. To date complete genome sequences of APMV-4 are available for only strains, which were isolated from ducks in Hong Kong, Korea and Belgium over a period of 37 years. We have carried out genome sequencing from the nucleocapsid (N) gene-end signal to the polymerase (L) gene-start signal of five APMV-4 strains recently isolated from Italy. Each of the eight APMV-4 strains has the same F protein cleavage site, DIQPR↓F. They also share a high level of nucleotide and amino acid sequence identity: for example, the F and HN glycoproteins have greater than 97% sequence identity between the various strains. Thus, comparison of these eight strains of APMV-4 did not provide evidence of substantial diversity, in contrast to similar studies with APMV-2, -3, and -6, in which the F and HN glycoproteins exhibited up to 20-30% amino acid sequence variation within a subgroup. Reciprocal cross-HI assay using post infection chicken sera also failed to detect significant antigenic variation among the available APMV-4 strains.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, N.I.H., Intramural

MeSH terms

  • Animals
  • Avulavirus / classification*
  • Avulavirus / genetics*
  • Avulavirus / growth & development
  • Base Sequence
  • Cell Line
  • Chick Embryo
  • Chickens
  • Gene Order
  • Genetic Variation*
  • Genome, Viral
  • Molecular Sequence Data
  • Phosphoproteins / chemistry
  • Phosphoproteins / genetics
  • Phylogeny
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Serotyping
  • Viral Proteins / chemistry
  • Viral Proteins / genetics

Substances

  • Phosphoproteins
  • Viral Proteins

Associated data

  • GENBANK/JX501910
  • GENBANK/JX501911
  • GENBANK/JX501912
  • GENBANK/JX501913
  • GENBANK/JX501914