Sphingobacterium caeni sp. nov., isolated from activated sludge

Int J Syst Evol Microbiol. 2013 Jun;63(Pt 6):2260-2264. doi: 10.1099/ijs.0.046987-0. Epub 2012 Nov 12.

Abstract

The taxonomic status of a bacterium, strain DC-8(T), isolated from activated sludge, was determined using a polyphasic taxonomic approach. The cells of strain DC-8(T) were Gram-negative, non-motile, non-spore-forming and rod-shaped. The isolate grew at temperature range of 10-40 °C (optimum 30-35 °C), pH range of 5.0-10.0 (optimum 6.5-8.0) and NaCl concentrations of 0-5% (optimum 0-1%). The predominant menaquinone of strain DC-8(T) was MK-7 and major fatty acids were summed feature 3 (C16:1ω6c and/or C16:1ω7c; 39.7%), iso-C15:0 (33.7%) and C16:0 (5.2%). The DNA G+C content was 39.8 mol%. Phylogenetic analysis based on 16S rRNA gene sequence comparison revealed that strain DC-8(T) was a member of the genus Sphingobacterium. Strain DC-8(T) shared the highest similarity with Sphingobacterium siyangense SY1(T) (98.4%), Sphingobacterium multivorum IAM 14316(T) (98.3%), Sphingobacterium canadense CR11(T) (98.0%) and Sphingobacterium detergens 6.2S(T) (97.9%) and shared less than 97% similarity with other members of the genus Sphingobacterium. DNA-DNA hybridization experiments showed that the DNA-DNA relatedness values between strain DC-8(T) and its closest phylogenetic neighbours were below 70%. Based on the phylogenetic analysis, DNA-DNA hybridization, whole-cell fatty acid composition as well as biochemical characteristics, strain DC-8(T) was clearly distinguished from all recognized species of the genus Sphingobacterium and should be classified as a representative of a novel species of the genus Sphingobacterium, for which the name Sphingobacterium caeni sp. nov. is proposed. The type strain is DC-8(T) (=CCTCC AB 2012020(T)=KACC 16850(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • China
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sewage / microbiology*
  • Sphingobacterium / classification*
  • Sphingobacterium / genetics
  • Sphingobacterium / isolation & purification
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / analysis

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Sewage
  • Vitamin K 2
  • menaquinone 7

Associated data

  • GENBANK/JX046042
  • GENBANK/KC020116