Evaluation of a multiplex real-time PCR assay for the detection of respiratory viruses in clinical specimens

Ann Lab Med. 2012 Nov;32(6):399-406. doi: 10.3343/alm.2012.32.6.399. Epub 2012 Oct 17.

Abstract

Background: In this study, we evaluated the analytical performance and clinical potential of a one-step multiplex real-time PCR assay for the simultaneous detection of 14 types of respiratory viruses using the AdvanSure RV real-time PCR Kit (LG Life Sciences, Korea).

Methods: Three hundred and twenty clinical specimens were tested with the AdvanSure RV real-time PCR Kit and conventional multiplex reverse transcription (RT)-PCR assay. The assay results were analyzed and the one-step AdvanSure RV real-time PCR Kit was compared with the conventional multiplex RT-PCR assay with respect to the sensitivity and specificity of the detection of respiratory viruses.

Results: The limit of detection (LOD) was 1.31 plaque-forming units (PFU)/mL for human rhinoviruses (hRVs), 4.93 PFU/mL for human coronavirus HCoV-229E/NL63, 2.67 PFU/mL for human coronavirus HCoV-OC43, 18.20 PFU/mL for parainfluenza virus 1 (PIV)-1, 24.57 PFU/mL for PIV-2, 1.73 PFU/mL for PIV-3, 1.79 PFU/mL for influenza virus group (Flu) A, 59.51 PFU/mL for FluB, 5.46 PFU/mL for human respiratory syncytial virus (hRSV)-A, 17.23 PFU/mL for hRSV-B, 9.99 PFU/mL for human adenovirus (ADVs). The cross-reactivity test for this assay against 23 types of non-respiratory viruses showed negative results for all viruses tested. The agreement between the one-step AdvanSure multiplex real-time PCR assay and the conventional multiplex RT-PCR assay was 98%.

Conclusions: The one-step AdvanSure RV multiplex real-time PCR assay is a simple assay with high potential for specific, rapid and sensitive laboratory diagnosis of respiratory viruses compared to conventional multiplex RT-PCR.

Keywords: Limit of detection; Multiplex real-time PCR; Respiratory virus.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenoviridae / genetics
  • Coronavirus / genetics
  • DNA, Viral / analysis*
  • Humans
  • Lung Diseases / diagnosis
  • Lung Diseases / virology*
  • Multiplex Polymerase Chain Reaction*
  • Orthomyxoviridae / genetics
  • RNA, Viral / analysis*
  • Reagent Kits, Diagnostic
  • Respiratory Syncytial Virus, Human / genetics
  • Respirovirus / genetics
  • Rhinovirus / genetics

Substances

  • DNA, Viral
  • RNA, Viral
  • Reagent Kits, Diagnostic