MBD2 and multiple domains of CHD4 are required for transcriptional repression by Mi-2/NuRD complexes

Mol Cell Biol. 2012 Dec;32(24):5078-88. doi: 10.1128/MCB.00819-12. Epub 2012 Oct 15.

Abstract

Mi-2/nucleosome remodeling and deacetylase (NuRD) chromatin remodeling complexes are important regulators of chromatin structure and DNA accessibility. We examined requirements for individual domains of chromodomain helicase DNA-binding protein 4 (CHD4), a core catalytic component of NuRD complexes, as well as the NuRD subunit methyl-binding domain protein 2 (MBD2) and methylated DNA, for NuRD function in the context of tissue-specific transcription. By itself, loss of NuRD activity is not sufficient for transcriptional activation. However, NuRD complexes greatly reduce activation of the B cell-specific mb-1 (Cd79a) gene by the transcription factors EBF1 and Pax5. Using our B cell model system, we determined that the two chromodomains and ATPase/helicase and C-terminal domains (CTD) of CHD4 are all necessary for repression of mb-1 promoters by NuRD. All of these domains except the CTD are required for efficient association of CHD4 with mb-1 promoter chromatin. Loss of MBD2 expression or of DNA methylation impaired association of CHD4 with mb-1 promoter chromatin and enhanced its transcription. We conclude that repressive functions of MBD2-containing NuRD complexes are dependent on cooperative interactions between the major domains of CHD4 with histones and DNA and on binding of methylated DNA by MBD2.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Autoantigens / chemistry
  • Autoantigens / genetics
  • Autoantigens / metabolism*
  • B-Lymphocytes / metabolism
  • Base Sequence
  • CD79 Antigens / genetics
  • Cell Line
  • DNA Methylation
  • DNA-Binding Proteins / chemistry
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism*
  • Humans
  • Mi-2 Nucleosome Remodeling and Deacetylase Complex / chemistry
  • Mi-2 Nucleosome Remodeling and Deacetylase Complex / genetics
  • Mi-2 Nucleosome Remodeling and Deacetylase Complex / metabolism*
  • Models, Biological
  • Models, Molecular
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • PAX5 Transcription Factor / metabolism
  • Promoter Regions, Genetic
  • Protein Interaction Domains and Motifs
  • RNA, Small Interfering / genetics
  • Sequence Homology, Amino Acid
  • Trans-Activators / metabolism
  • Transcription, Genetic

Substances

  • Autoantigens
  • CD79 Antigens
  • CD79A protein, human
  • CHD4 protein, human
  • DNA-Binding Proteins
  • EBF1 protein, human
  • MBD2 protein, human
  • PAX5 Transcription Factor
  • PAX5 protein, human
  • RNA, Small Interfering
  • Trans-Activators
  • Mi-2 Nucleosome Remodeling and Deacetylase Complex