New insights into [FeFe] hydrogenase activation and maturase function

PLoS One. 2012;7(9):e45850. doi: 10.1371/journal.pone.0045850. Epub 2012 Sep 25.

Abstract

[FeFe] hydrogenases catalyze H(2) production using the H-cluster, an iron-sulfur cofactor that contains carbon monoxide (CO), cyanide (CN(-)), and a dithiolate bridging ligand. The HydE, HydF, and HydG maturases assist in assembling the H-cluster and maturing hydrogenases into their catalytically active form. Characterization of these maturases and in vitro hydrogenase activation methods have helped elucidate steps in the H-cluster biosynthetic pathway such as the HydG-catalyzed generation of the CO and CN(-) ligands from free tyrosine. We have refined our cell-free approach for H-cluster synthesis and hydrogenase maturation by using separately expressed and purified HydE, HydF, and HydG. In this report, we illustrate how substrates and protein constituents influence hydrogenase activation, and for the first time, we show that each maturase can function catalytically during the maturation process. With precise control over the biomolecular components, we also provide evidence for H-cluster synthesis in the absence of either HydE or HydF, and we further show that hydrogenase activation can occur without exogenous tyrosine. Given these findings, we suggest a new reaction sequence for the [FeFe] hydrogenase maturation pathway. In our model, HydG independently synthesizes an iron-based compound with CO and CN(-) ligands that is a precursor to the H-cluster [2Fe](H) subunit, and which we have termed HydG-co. We further propose that HydF is a transferase that stabilizes HydG-co and also shuttles the complete [2Fe](H) subcluster to the hydrogenase, a translocation process that may be catalyzed by HydE. In summary, this report describes the first example of reconstructing the [FeFe] hydrogenase maturation pathway using purified maturases and subsequently utilizing this in vitro system to better understand the roles of HydE, HydF, and HydG.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Proteins / chemistry
  • Catalysis
  • Electron Spin Resonance Spectroscopy
  • Enzyme Activation
  • Escherichia coli / enzymology
  • Escherichia coli Proteins / chemistry*
  • Fermentation
  • GTP-Binding Proteins / chemistry*
  • Hydrogenase / chemistry*
  • Hydrogenase / metabolism
  • Iron / chemistry
  • Iron-Sulfur Proteins / biosynthesis
  • Iron-Sulfur Proteins / chemistry*
  • Iron-Sulfur Proteins / metabolism
  • Proteins / chemistry*
  • Shewanella / enzymology
  • Temperature
  • Trans-Activators / chemistry*
  • Tyrosine / chemistry

Substances

  • Bacterial Proteins
  • Escherichia coli Proteins
  • HypB protein, E coli
  • HypD protein, Bacteria
  • Iron-Sulfur Proteins
  • Proteins
  • Trans-Activators
  • zraR protein, E coli
  • Tyrosine
  • Iron
  • iron hydrogenase
  • Hydrogenase
  • GTP-Binding Proteins

Grants and funding

This work was supported by the United States Department of Energy, Office of Basic Energy Sciences, Division of Materials Sciences and Engineering under award #DE-FG02-09ER46632 (cell-free studies) and the United States Department of Energy, Office of Sciences under award #DE-SC0004334 (spectroscopic studies). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.