Evidence for water-tuned structural differences in proteins: an approach emphasizing variations in local hydrophilicity

PLoS One. 2012;7(9):e45681. doi: 10.1371/journal.pone.0045681. Epub 2012 Sep 25.

Abstract

We present experimental evidence for the significant effect that water can have on the functional structure of proteins in solution. Human (HSA) and Bovine Serum Albumin (BSA) have an amino acid sequence identity of 75.52% and are chosen as model proteins. We employ EPR-based nanoscale distance measurements using double electron-electron resonance (DEER) spectroscopy and both albumins loaded with long chain fatty acids (FAs) in solution to globally (yet indirectly) characterize the tertiary protein structures from the bound ligands' points of view. The complete primary structures and crystal structures of HSA and as of recently also BSA are available. We complement the picture as we have recently determined the DEER-derived solution structure of HSA and here present the corresponding BSA solution structure. The characteristic asymmetric FA distribution in the crystal structure of HSA can surprisingly be observed by DEER in BSA in solution. This indicates that the BSA conformational ensemble in solution seems to be narrow and close to the crystal structure of HSA. In contrast, for HSA in solution a much more symmetric FA distribution was found. Thus, conformational adaptability and flexibility dominate in the HSA solution structure while BSA seems to lack these properties. We further show that differences in amino acid hydropathies of specific structural regions in both proteins can be used to correlate the observed difference in the global (tertiary) solution structures with the differences on the primary structure level.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cattle
  • Electron Spin Resonance Spectroscopy
  • Electrons
  • Fatty Acids / chemistry
  • Humans
  • Hydrophobic and Hydrophilic Interactions*
  • Ligands
  • Models, Molecular
  • Molecular Conformation
  • Protein Binding
  • Protein Conformation
  • Protein Structure, Tertiary
  • Serum Albumin / chemistry*
  • Serum Albumin, Bovine / chemistry*
  • Spectrophotometry / methods
  • Water / chemistry*

Substances

  • Fatty Acids
  • Ligands
  • Serum Albumin
  • Water
  • Serum Albumin, Bovine

Grants and funding

This work was funded by the Max Planck Society (www.mpg.de). The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.