Full genomic analysis of a human rotavirus G1P[8] strain isolated in South Korea

J Med Virol. 2013 Jan;85(1):157-70. doi: 10.1002/jmv.23366. Epub 2012 Sep 28.

Abstract

A rotavirus G1P[8] strain C1-81 was isolated from a 5-month-old female infant admitted to hospital with fever and severe diarrhea in Incheon, South Korea. To investigate its full genomic relatedness and its group, the full genome of strain C1-81 was determined. Based on a full genome classification system, C1-81 was shown to possess the typical Wa-like genotype constellation: G1-P[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1. On the basis of sequence similarities, the strain was shown to be the closest related strain to contemporary human rotavirus strains with recent strains isolated in Asia. This C1-81 strain showed the highest degree of nucleic acid similarity (98.8% and 97%) to G1 B4633-03 and P[8] (Thai-1604 and Dhaka8-02), respectively. This is the first report that group A rotavirus was analyzed with G1P[8] in South Korea. The study of the complete genome of the virus will help understanding of the evolution of rotavirus.

Publication types

  • Case Reports
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Diarrhea / virology
  • Female
  • Genome, Viral*
  • Genotype
  • Humans
  • Infant
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Viral / genetics*
  • Republic of Korea
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification
  • Rotavirus Infections / virology
  • Sequence Analysis, DNA*
  • Sequence Homology, Nucleic Acid

Substances

  • RNA, Viral

Associated data

  • GENBANK/JN887809
  • GENBANK/JN887810
  • GENBANK/JN887811
  • GENBANK/JN887812
  • GENBANK/JN887813
  • GENBANK/JN887814
  • GENBANK/JN887815
  • GENBANK/JN887816
  • GENBANK/JN887817
  • GENBANK/JN887818
  • GENBANK/JN887819