Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy

Biao Tang; Wei Zhao; Huajun Zheng; Ying Zhuo; Lixin Zhang; Guo-Ping Zhao

doi:10.1128/JB.01295-12

Complete genome sequence of Amycolatopsis mediterranei S699 based on de novo assembly via a combinatorial sequencing strategy

J Bacteriol. 2012 Oct;194(20):5699-700. doi: 10.1128/JB.01295-12.

Authors

Biao Tang¹, Wei Zhao, Huajun Zheng, Ying Zhuo, Lixin Zhang, Guo-Ping Zhao

Affiliation

¹ State Key Laboratory of Genetic Engineering, Department of Microbiology, School of Life Sciences and Institute of Biomedical Sciences, Fudan University, Shanghai, China.

Abstract

The genome of Amycolatopsis mediterranei S699 was resequenced and assembled de novo. By comparing the sequences of S699 previously released and that of A. mediterranei U32, about 10 kb of major indels was found to differ between the two S699 genomes, and the differences are likely attributable to their different assembly strategies.

Publication types

Comparative Study
Research Support, Non-U.S. Gov't

MeSH terms

Actinomycetales / genetics*
Actinomycetales / isolation & purification
DNA, Bacterial / chemistry*
DNA, Bacterial / genetics*
Genome, Bacterial*
INDEL Mutation
Molecular Sequence Data
Sequence Analysis, DNA*

Substances

DNA, Bacterial

Associated data

GENBANK/CP003729