The structure of augmenter of liver regeneration crystallized in the presence of 50 mM CdCl2 reveals a novel Cd2Cl4O6 cluster that aids in crystal packing

Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1128-33. doi: 10.1107/S0907444912022561. Epub 2012 Aug 18.

Abstract

The crystal structure of the protein augmenter of liver regeneration containing a 14-residue hexahistidine purification tag (hsALR) has been determined to 2.4 Å resolution by Cd-SAD using a highly redundant data set collected on a rotating-anode home X-ray source and processed in 1998. The hsALR crystal structure is a tetramer composed of two homodimers bridged by a novel Cd(2)Cl(4)O(6) cluster via binding to the side-chain carboxylate groups of two solvent-exposed aspartic acid residues. A comparison with the native sALR tetramer shows that the cluster dramatically changes the hsALR dimer-dimer interface, which can now better accommodate the extra 14 N-terminal residues associated with the purification tag. The refined 2.4 Å resolution structure is in good agreement with both the X-ray data (R(cryst) of 0.165, R(free) of 0.211) and the expected stereochemistry (r.m.s. deviations from ideality for bond lengths and bond angles of 0.007 Å and 1.15°, respectively).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acids / chemistry*
  • Cadmium Chloride / chemistry*
  • Cadmium Compounds / chemistry*
  • Crystallography, X-Ray
  • Cytochrome Reductases / chemistry*
  • Dimerization
  • Humans
  • Models, Molecular
  • Oxidoreductases Acting on Sulfur Group Donors
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Proteins / chemistry*

Substances

  • Acids
  • Cadmium Compounds
  • Proteins
  • Cytochrome Reductases
  • GFER protein, human
  • Oxidoreductases Acting on Sulfur Group Donors
  • Cadmium Chloride

Associated data

  • PDB/3R7C