Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation

Proc Natl Acad Sci U S A. 2012 Sep 11;109(37):E2466-75. doi: 10.1073/pnas.1205638109. Epub 2012 Aug 17.

Abstract

Transformation promotes genome plasticity in bacteria via RecA-driven homologous recombination. In the gram-positive human pathogen Streptococcus pneumoniae, the transformasome a multiprotein complex, internalizes, protects, and processes transforming DNA to generate chromosomal recombinants. Double-stranded DNA is internalized as single strands, onto which the transformation-dedicated DNA processing protein A (DprA) ensures the loading of RecA to form presynaptic filaments. We report that the structure of DprA consists of the association of a sterile alpha motif domain and a Rossmann fold and that DprA forms tail-to-tail dimers. The isolation of DprA self-interaction mutants revealed that dimerization is crucial for the formation of nucleocomplexes in vitro and for genetic transformation. Residues important for DprA-RecA interaction also were identified and mutated, establishing this interaction as equally important for transformation. Positioning of key interaction residues on the DprA structure revealed an overlap of DprA-DprA and DprA-RecA interaction surfaces. We propose a model in which RecA interaction promotes rearrangement or disruption of the DprA dimer, enabling the subsequent nucleation of RecA and its polymerization onto ssDNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Blotting, Western
  • Crystallization
  • DNA / metabolism
  • DNA Primers / genetics
  • Dimerization
  • Membrane Proteins / chemistry
  • Membrane Proteins / metabolism*
  • Models, Molecular*
  • Mutagenesis, Site-Directed
  • Protein Conformation*
  • Rec A Recombinases / metabolism*
  • Streptococcus pneumoniae / metabolism*
  • Transformation, Bacterial / genetics
  • Transformation, Bacterial / physiology*
  • Two-Hybrid System Techniques

Substances

  • Bacterial Proteins
  • DNA Primers
  • DprA protein, bacteria
  • Membrane Proteins
  • DNA
  • Rec A Recombinases

Associated data

  • PDB/3UQZ