Nuclear magnetic resonance structure and dynamics of the response regulator Sma0114 from Sinorhizobium meliloti

Biochemistry. 2012 Sep 4;51(35):6932-41. doi: 10.1021/bi300922z. Epub 2012 Aug 21.

Abstract

Receiver domains control intracellular responses triggered by signal transduction in bacterial two-component systems. Here, we report the solution nuclear magnetic resonance structure and dynamics of Sma0114 from the bacterium Sinorhizobium meliloti, the first such characterization of a receiver domain from the HWE-kinase family of two-component systems. The structure of Sma0114 adopts a prototypical α(5)/β(5) Rossman fold but has features that set it apart from other receiver domains. The fourth β-strand of Sma0114 houses a PFxFATGY sequence motif, common to many HWE-kinase-associated receiver domains. This sequence motif in Sma0114 may substitute for the conserved Y-T coupling mechanism, which propagates conformational transitions in the 455 (α4-β5-α5) faces of receiver domains, to prime them for binding downstream effectors once they become activated by phosphorylation. In addition, the fourth α-helix of the consensus 455 face in Sma0114 is replaced with a segment that shows high flexibility on the pico- to nanosecond time scale by (15)N relaxation data. Secondary structure prediction analysis suggests that the absence of helix α4 may be a conserved property of the HWE-kinase-associated family of receiver domains to which Sma0114 belongs. In spite of these differences, Sma0114 has a conserved active site, binds divalent metal ions such as Mg(2+) and Ca(2+) that are required for phosphorylation, and exhibits micro- to millisecond active-site dynamics similar to those of other receiver domains. Taken together, our results suggest that Sma0114 has a conserved active site but differs from typical receiver domains in the structure of the 455 face that is used to effect signal transduction following activation.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Calcium / metabolism
  • Catalytic Domain
  • Histidine Kinase
  • Magnesium / metabolism
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular
  • Phylogeny
  • Protein Conformation
  • Protein Folding
  • Protein Kinases / chemistry*
  • Protein Kinases / genetics
  • Protein Kinases / metabolism*
  • Protein Structure, Tertiary
  • Sinorhizobium meliloti / chemistry
  • Sinorhizobium meliloti / enzymology*
  • Sinorhizobium meliloti / genetics
  • Sinorhizobium meliloti / metabolism

Substances

  • Protein Kinases
  • Histidine Kinase
  • Magnesium
  • Calcium