Dehydration from conserved stem regions is fundamental for ligand-dependent conformational transition of the adenine-specific riboswitch

Chem Commun (Camb). 2012 Oct 9;48(78):9693-5. doi: 10.1039/c2cc34506d.

Abstract

Conformational dynamics and observed equilibrium constants for ligand binding of the adenine-specific riboswitch (add-A riboswitch) in the absence of Mg(2+) and presence of various concentrations of poly-ethylene glycol having an average molecular weight of 200 indicated that 54.2 water molecules were released from P2 and P3 stem regions of the add-A riboswitch during conformational transition upon the binding of 2-aminopurine, an analog of the natural ligand adenine.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine / chemistry*
  • Desiccation*
  • Ligands
  • Molecular Weight
  • Nucleic Acid Conformation*
  • Polyethylene Glycols / chemistry
  • Riboswitch*
  • Water / chemistry

Substances

  • Ligands
  • Riboswitch
  • Water
  • Polyethylene Glycols
  • Adenine