XRD and VCD: a marriage of love or convenience? Honeymoon around a cyclic urea derivative

Acta Crystallogr C. 2012 Jul;68(Pt 7):o247-52. doi: 10.1107/S010827011202358X. Epub 2012 Jun 13.

Abstract

The structures and absolute configurations of the enantiomers (3aR,8aR)-2,2-dimethyl-4,4,8,8-tetraphenyl-4,5,6,7,8,8a-hexahydro-3aH-1,3-dioxolo[4,5-e][1,3]diazepin-6-one 0.33-hydrate, C(32)H(30)N(2)O(3)·0.33H(2)O, (Ia), and (3aS,8aS)-2,2-dimethyl-4,4,8,8-tetraphenyl-4,5,6,7,8,8a-hexahydro-3aH-1,3-dioxolo[4,5-e][1,3]diazepin-6-one 0.39-hydrate, C(32)H(30)N(2)O(3)·0.39H(2)O, (Ib), have been elucidated unambiguously using the complementary power of single-crystal X-ray diffraction (XRD) and vibrational circular dichroism (VCD). The enantiomers crystallize in the Sohncke space group P2(1)2(1)2 and pack as dimers stabilized by two symmetric hydrogen bonds involving one amide group each of the cyclic urea moiety. This double interaction is capped by a water molecule that partially occupies a site lying on the twofold axis and forms an uncommon hydrogen bond between the two monomers. A comparison between the solid-state VCD characterizations and the Bayesian statistics on Bijvoet differences determined from the XRD measurements reveals a tendency towards the correct determination of the absolute configuration by this latter method.

MeSH terms

  • Azepines / chemistry*
  • Circular Dichroism
  • Crystallography, X-Ray
  • Dioxoles / chemistry*
  • Hydrogen Bonding
  • Models, Molecular
  • Stereoisomerism
  • Urea / chemistry*
  • X-Ray Diffraction

Substances

  • (3aR,8aR)-2,2-dimethyl-4,4,8,8-tetraphenyl-4,5,6,7,8,8a-hexahydro-3aH-1,3-dioxolo(4,5-e)(1,3)diazepin-6-one
  • Azepines
  • Dioxoles
  • Urea