Biosynthesis of the tunicamycin antibiotics proceeds via unique exo-glycal intermediates

Nat Chem. 2012 May 20;4(7):539-46. doi: 10.1038/nchem.1351.

Abstract

The tunicamycins are archetypal nucleoside antibiotics targeting bacterial peptidoglycan biosynthesis and eukaryotic protein N-glycosylation. Understanding the biosynthesis of their unusual carbon framework may lead to variants with improved selectivity. Here, we demonstrate in vitro recapitulation of key sugar-manipulating enzymes from this pathway. TunA is found to exhibit unusual regioselectivity in the reduction of a key α,β-unsaturated ketone. The product of this reaction is shown to be the preferred substrate for TunF--an epimerase that converts the glucose derivative to a galactose. In Streptomyces strains in which another gene (tunB) is deleted, the biosynthesis is shown to stall at this exo-glycal product. These investigations confirm the combined TunA/F activity and delineate the ordering of events in the metabolic pathway. This is the first time these surprising exo-glycal intermediates have been seen in biology. They suggest that construction of the aminodialdose core of tunicamycin exploits their enol ether motif in a mode of C-C bond formation not previously observed in nature, to create an 11-carbon chain.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / biosynthesis*
  • Anti-Bacterial Agents / chemistry
  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism
  • Biocatalysis
  • Carbohydrate Epimerases / chemistry
  • Carbohydrate Epimerases / metabolism
  • Computational Biology
  • Hydro-Lyases / chemistry
  • Hydro-Lyases / metabolism
  • Ketones / chemistry
  • Ketones / metabolism
  • Multigene Family
  • Protein Structure, Tertiary
  • Pseudomonas aeruginosa / enzymology
  • Stereoisomerism
  • Substrate Specificity
  • Tunicamycin / biosynthesis*
  • Tunicamycin / chemistry

Substances

  • Anti-Bacterial Agents
  • Bacterial Proteins
  • Ketones
  • Tunicamycin
  • Hydro-Lyases
  • wbpM protein, Pseudomonas aeruginosa
  • Carbohydrate Epimerases
  • UDP-N-acetylglucosamine 4-epimerase