In granular iron permeable reactive barriers (PRBs), hydrogen gas formation, entrapment and release of gas bubbles, and secondary mineral precipitation have been known to affect the permeability and reactivity. The multicomponent reactive transport model MIN3P was enhanced to couple gas formation and release, secondary mineral precipitation, and the effects of these processes on hydraulic properties and iron reactivity. The enhanced model was applied to a granular iron column, which was studied for the treatment of trichloroethene (TCE) in the presence of dissolved CaCO(3). The simulation reasonably reproduced trends in gas formation, secondary mineral precipitation, permeability changes, and reactivity changes observed over time. The simulation showed that the accumulation of secondary minerals reduced the reactivity of the granular iron over time, which in turn decreased the rate of mineral accumulation, and also resulted in a gradual decrease in gas formation over time. This study provides a quantitative assessment of the evolving nature of geochemistry and permeability, resulting from coupled processes of gas formation and mineral precipitation, which leads to a better understanding of the processes controlling the granular iron reactivity, and represents an improved method for incorporating these factors into the design of granular iron PRBs.