An insight into iTRAQ: where do we stand now?

Anal Bioanal Chem. 2012 Sep;404(4):1011-27. doi: 10.1007/s00216-012-5918-6. Epub 2012 Mar 27.

Abstract

The iTRAQ (isobaric tags for relative and absolute quantification) technique is widely employed in proteomic workflows requiring relative quantification. Here, we review the iTRAQ literature; in particular, we focus on iTRAQ usage in relation to other commonly used quantitative techniques e.g. stable isotope labelling in culture (SILAC), label-free methods and selected reaction monitoring (SRM). As a result, we identify several issues arising with respect to iTRAQ. Perhaps frustratingly, iTRAQ's attractiveness has been undermined by a number of technical and analytical limitations: it may not be truly quantitative, as the changes in abundance reported will generally be underestimated. We discuss weaknesses and strengths of iTRAQ as a methodology for relative quantification in the light of this and other technical issues. We focus on technical developments targeted at iTRAQ accuracy and precision, use of 4-plex over 8-plex reagents and application of iTRAQ to post-translational modification (PTM) workflows. We also discuss iTRAQ in relation to label-free approaches, to which iTRAQ is losing ground.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Animals
  • Humans
  • Isotope Labeling / instrumentation
  • Isotope Labeling / methods
  • Mass Spectrometry / instrumentation
  • Mass Spectrometry / methods
  • Proteins / chemistry*
  • Proteomics / instrumentation
  • Proteomics / methods*

Substances

  • Proteins