Halomonas beimenensis sp. nov., isolated from an abandoned saltern

Int J Syst Evol Microbiol. 2012 Dec;62(Pt 12):3013-3017. doi: 10.1099/ijs.0.036871-0. Epub 2012 Feb 3.

Abstract

A Gram-staining negative, motile, non-spore-forming, short rod-shaped (0.8-1.5 × 1.5-2.0 µm), halophilic bacterium, designated strain NTU-107(T), was isolated from brine samples collected from the abandoned Beimen saltern in southern Taiwan. The novel strain grew with 0-15% (w/v) NaCl (optimum between 5% and 10%), at 15-55 °C (optimum 40 °C) and at pH 5.5-9.5 (optimum pH 7.5). The major cellular fatty acids were C(18:1)ω7c, C(16:0) and C(19:0 )cyclo ω8c, the genomic DNA G+C content was 66.5 mol%, and the predominant ubiquinone was Q-9. The major polar lipids included phosphatidylglycerol, diphosphatidylglycerol and phosphatidylethanolamine. In a phylogenetic analysis based on 16S rRNA gene sequences, strain NTU-107(T) clustered with members of the genus Halomonas. In hybridization experiments, however, the levels of DNA-DNA relatedness between strain NTU-107(T) and the type strains of its closest phylogenetic neighbours (Halomonas koreensis, H. organivorans and H. ventosae) were all found to be less than 40 %. Based on the phenotypic, chemotaxonomic and genetic data, strain NTU-107(T) represents a novel species within the genus Halomonas, for which the name Halomonas beimenensis sp. nov. is proposed. The type strain is NTU-107(T) ( = BCRC 17999(T) = KCTC 22876(T) = JCM 16084(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Halomonas / classification*
  • Halomonas / genetics
  • Halomonas / isolation & purification
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Salts*
  • Sequence Analysis, DNA
  • Taiwan
  • Water Microbiology*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • RNA, Ribosomal, 16S
  • Salts
  • brine

Associated data

  • GENBANK/EU159469