[Characterization of recombinant single-stranded DNA-binding protein from Escherichia coli and its application in accurate pyrosequencing]

Sheng Wu Gong Cheng Xue Bao. 2011 Oct;27(10):1513-20.
[Article in Chinese]

Abstract

We expressed recombinant single-stranded DNA-binding protein (r-SSBP) from Escherichia coli with the molecular weight of 24-kDa by using genetic engineering strategy, and demonstrated the single-stranded DNA (ssDNA)-binding activity of r-SSBP by electrophoretic mobility shift assay (EMSA). To further characterize r-SSBP, we studied the effects of r-SSBP on melting temperature (T(m)) of DNA. The results showed that r-SSBP could bind to ssDNA, and lower the T(m) of DNA, especially for single-base mismatched DNA. Therefore, r-SSBP significantly increased the T(m) difference between single-base mismatched DNA and perfect matched DNA. These results are very beneficial for single-nucleotide polymorphism detection. Moreover, we applied r-SSBP in high sensitive pyrosequencing system developed by our group. The results suggest that the r-SSBP decreased non-specific signals, corrected the proportion of signal peak height and improved the performance of pyrosequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA-Binding Proteins / biosynthesis*
  • DNA-Binding Proteins / genetics
  • Diphosphates / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Genetic Vectors
  • Recombinant Proteins / biosynthesis*
  • Recombinant Proteins / genetics
  • Sequence Analysis, DNA / methods*

Substances

  • DNA-Binding Proteins
  • Diphosphates
  • Recombinant Proteins