Detection of single nucleotide polymorphisms within a sequence of a gene associated with prostate cancer using a fluorophore-tagged DNA probe

Bioorg Med Chem Lett. 2012 Jan 1;22(1):129-32. doi: 10.1016/j.bmcl.2011.11.053. Epub 2011 Nov 20.

Abstract

Single nucleotide polymorphisms within a sequence of a gene associated with prostate cancer were identified using oligodeoxynucleotide probe sequences bearing internal anthracene fluorophores proximal to the SNP site. Depending upon the nature of the synthesised target sequences, probe-target duplex formation could lead to enhanced or attenuated fluorescence emission from the anthracene, enabling detection of a proximal base-pair as either matching or mismatching.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anthracenes / chemistry
  • Base Pair Mismatch
  • Base Sequence
  • DNA / chemistry*
  • DNA / genetics
  • DNA Probes / chemistry*
  • Fluorescent Dyes / chemistry*
  • Humans
  • Male
  • Models, Chemical
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Polymorphism, Single Nucleotide*
  • Prostatic Neoplasms / genetics
  • Prostatic Neoplasms / metabolism*
  • Spectrophotometry, Ultraviolet
  • Temperature
  • Thermodynamics

Substances

  • Anthracenes
  • DNA Probes
  • Fluorescent Dyes
  • DNA