Synthesis of directly linked diazine isosteres of pyrrole-polyamide that photochemically cleave DNA

Org Biomol Chem. 2012 Feb 7;10(5):1040-6. doi: 10.1039/c1ob06803b. Epub 2011 Dec 7.

Abstract

A distamycin model containing an isosteric diazine linked pyrrole has been designed and synthesized. The key steps of the synthesis involved the successful diazotization of the 4-amino-pyrrole derivatives to give the diazomium salts, which undergo coupling reactions with N-methylpyrrole to yield the directly linked diazine compounds. The amide isosteric-diazine pyrrole I demonstrated photo-induced DNA damage upon iradiation with UV light (365 nm). Spectrophotometric and mass spectrometric identification suggest that the azo-linkage in I did not dissociate during irradiation. Moreover, compound I produced DNase I footprints with the HexB DNA fragment at AT sites, as well as some other mixed sequences (5'-ATGTCG-3'), indicative of the additional role of the diazine-linkage for interaction at the duplex DNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA / chemistry*
  • Diazonium Compounds / chemical synthesis
  • Diazonium Compounds / chemistry*
  • Esters / chemical synthesis
  • Esters / chemistry
  • Models, Molecular
  • Nylons / chemical synthesis
  • Nylons / chemistry*
  • Photolysis
  • Pyrroles / chemical synthesis
  • Pyrroles / chemistry*

Substances

  • Diazonium Compounds
  • Esters
  • Nylons
  • Pyrroles
  • DNA