Poly(T) adaptor RT-PCR

Methods Mol Biol. 2012:822:53-66. doi: 10.1007/978-1-61779-427-8_4.

Abstract

Reverse transcription PCR (RT-PCR) is one of the most important techniques for analyzing RNA abundance. MicroRNAs (miRNAs) are a group of 20- to 24-nucleotide regulatory small RNAs which play an important role in plants and animals. However, the small size of miRNAs makes them difficult to be detected and quantified by conventional RT-PCR techniques. Here, we describe a poly(T) adaptor RT-PCR method specifically designed for quantifying miRNAs. In this method, total RNAs, including miRNAs, are extended by a poly(A) tailing reaction using poly(A) polymerase and ATP. The miRNA with a poly(A) tail is converted into cDNA through reverse transcription primed by a poly(T) adaptor, and then PCR-amplified using a miRNA-specific forward primer and a universal poly(T) adaptor reverse primer. The RT-PCR amplification can be monitored by real-time detection or by end-point detection for quantifying the miRNA transcript level. The PCR amplicons can be sequenced for validating the expression of the specific miRNA gene.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Animals
  • Cloning, Molecular / methods
  • DNA Primers*
  • MicroRNAs / analysis*
  • MicroRNAs / chemistry
  • Poly T*
  • RNA / analysis
  • RNA / isolation & purification
  • RNA, Plant / analysis
  • RNA, Plant / isolation & purification
  • Real-Time Polymerase Chain Reaction / methods
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Reverse Transcription
  • Sequence Analysis, DNA / methods

Substances

  • DNA Primers
  • MicroRNAs
  • RNA, Plant
  • Poly T
  • RNA