Hydrophobicity and conformational change as mechanistic determinants for nonspecific modulators of amyloid β self-assembly

Biochemistry. 2012 Jan 10;51(1):126-37. doi: 10.1021/bi201745g. Epub 2011 Dec 14.

Abstract

The link between many neurodegenerative disorders, including Alzheimer's and Parkinson's diseases, and the aberrant folding and aggregation of proteins has prompted a comprehensive search for small organic molecules that have the potential to inhibit such processes. Although many compounds have been reported to affect the formation of amyloid fibrils and/or other types of protein aggregates, the mechanisms by which they act are not well understood. A large number of compounds appear to act in a nonspecific way affecting several different amyloidogenic proteins. We describe here a detailed study of the mechanism of action of one representative compound, lacmoid, in the context of the inhibition of the aggregation of the amyloid β-peptide (Aβ) associated with Alzheimer's disease. We show that lacmoid binds Aβ(1-40) in a surfactant-like manner and counteracts the formation of all types of Aβ(1-40) and Aβ(1-42) aggregates. On the basis of these and previous findings, we are able to rationalize the molecular mechanisms of action of nonspecific modulators of protein self-assembly in terms of hydrophobic attraction and the conformational preferences of the polypeptide.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amyloid beta-Peptides / antagonists & inhibitors
  • Amyloid beta-Peptides / biosynthesis
  • Amyloid beta-Peptides / chemistry*
  • Binding, Competitive
  • Circular Dichroism
  • Congo Red / chemistry
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Models, Molecular
  • Nanostructures / chemistry*
  • Nuclear Magnetic Resonance, Biomolecular
  • Oxazines / chemistry*
  • Peptide Fragments / antagonists & inhibitors
  • Peptide Fragments / biosynthesis
  • Peptide Fragments / chemistry*
  • Protein Binding
  • Protein Conformation
  • Scattering, Radiation
  • Small Molecule Libraries / chemistry
  • Surface-Active Agents / chemistry

Substances

  • Amyloid beta-Peptides
  • Oxazines
  • Peptide Fragments
  • Small Molecule Libraries
  • Surface-Active Agents
  • amyloid beta-protein (1-40)
  • lacmoid
  • Congo Red