Construct optimization for studying protein complexes: obtaining diffraction-quality crystals of the pseudosymmetric PSPC1-NONO heterodimer

Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):981-7. doi: 10.1107/S0907444911039606. Epub 2011 Oct 19.

Abstract

The methodology of protein crystallography provides a number of potential bottlenecks. Here, an approach to successful structure solution of a difficult heterodimeric complex of two human proteins, paraspeckle component 1 (PSPC1) and non-POU domain-containing octamer-binding protein (NONO), that are involved in gene regulation and the structural integrity of nuclear bodies termed paraspeckles is described. With the aid of bioinformatic predictions and systematic screening of a panel of constructs, bottlenecks of protein solubility, crystallization, crystal quality and crystallographic pseudosymmetry were overcome in order to produce crystals that ultimately revealed the structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology
  • Crystallization
  • Crystallography, X-Ray* / methods
  • DNA-Binding Proteins
  • Gene Expression Regulation
  • Humans
  • Intranuclear Inclusion Bodies / chemistry*
  • Intranuclear Inclusion Bodies / genetics
  • Intranuclear Inclusion Bodies / metabolism
  • Multiprotein Complexes / chemistry*
  • Multiprotein Complexes / metabolism
  • Nuclear Matrix-Associated Proteins / chemistry*
  • Nuclear Matrix-Associated Proteins / metabolism
  • Nuclear Proteins / chemistry*
  • Nuclear Proteins / metabolism
  • Octamer Transcription Factors / chemistry*
  • Octamer Transcription Factors / metabolism
  • Protein Multimerization
  • RNA-Binding Proteins / chemistry*
  • RNA-Binding Proteins / metabolism
  • Solubility
  • Stereoisomerism

Substances

  • DNA-Binding Proteins
  • Multiprotein Complexes
  • NONO protein, human
  • Nuclear Matrix-Associated Proteins
  • Nuclear Proteins
  • Octamer Transcription Factors
  • PSPC1 protein, human
  • RNA-Binding Proteins