Streptomyces deserti sp. nov., isolated from hyper-arid Atacama Desert soil

Antonie Van Leeuwenhoek. 2012 Mar;101(3):575-81. doi: 10.1007/s10482-011-9672-0. Epub 2011 Nov 12.

Abstract

The taxonomic position of a Streptomyces strain isolated from a hyper-arid desert soil was established using a polyphasic approach. The organism had chemical and morphological properties typical of the genus Streptomyces and formed a phyletic line at the periphery of the Streptomyces coeruleorubidus subcluster in the 16S rRNA gene tree. DNA:DNA relatedness values between the isolate and its nearest phylogenetic neighbours, Streptomyces lomondensis NRRL 3252(T) and Streptomyces lusitanus NRRL B-12501(T) were 42.5 (±0.48)% and 25.0 (±1.78)%, respectively. The isolate was readily distinguished from these organisms using a combination of morphological and phenotypic properties. On the basis of these results, it is proposed that isolate C63(T) (CGMCC 4.6997(T), = KACC 15425(T)) be classified as the type strain of Streptomyces deserti sp. nov.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carbon / metabolism
  • Chile
  • Culture Media
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Desert Climate*
  • Humidity
  • Molecular Sequence Data
  • Nitrogen / metabolism
  • Phenotype
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Ribotyping
  • Sequence Alignment
  • Sequence Homology, Nucleic Acid
  • Soil Microbiology*
  • Species Specificity
  • Streptomyces / classification
  • Streptomyces / genetics
  • Streptomyces / growth & development
  • Streptomyces / isolation & purification*
  • Streptomyces / metabolism

Substances

  • Culture Media
  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Carbon
  • Nitrogen

Associated data

  • GENBANK/HE577172