Human sapovirus classification based on complete capsid nucleotide sequences

Arch Virol. 2012 Feb;157(2):349-52. doi: 10.1007/s00705-011-1161-2. Epub 2011 Nov 11.

Abstract

The genetically diverse sapoviruses (SaVs) are a significant cause of acute human gastroenteritis. Human SaV surveillance is becoming more critical, and a better understanding of the diversity and distribution of the viral genotypes is needed. In this study, we analyzed 106 complete human SaV capsid nucleotide sequences to provide a better understanding of their diversity. Based on those results, we propose a novel standardized classification scheme that meets the requirements of the International Calicivirus Scientific Committee. We believe the classification scheme and strains described here will be of value for the molecular characterization and classification of newly detected SaV genotypes and for comparing data worldwide.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Caliciviridae Infections / virology*
  • Capsid Proteins / genetics*
  • Genetic Variation
  • Humans
  • Molecular Sequence Data
  • Phylogeny
  • Sapovirus / classification*
  • Sapovirus / genetics
  • Sapovirus / isolation & purification*

Substances

  • Capsid Proteins

Associated data

  • GENBANK/AB429084
  • GENBANK/AB522390
  • GENBANK/AB522391
  • GENBANK/AB522392
  • GENBANK/AB622429
  • GENBANK/AB622432
  • GENBANK/AB622435
  • GENBANK/AB622436
  • GENBANK/AB622437
  • GENBANK/AB622438
  • GENBANK/AB622439
  • GENBANK/AB622441
  • GENBANK/AB623037
  • GENBANK/AB630067
  • GENBANK/AB630068
  • GENBANK/AB630340