High-resolution crystal structure of spectrin SH3 domain fused with a proline-rich peptide

J Biomol Struct Dyn. 2011 Dec;29(3):485-95. doi: 10.1080/07391102.2011.10507400.

Abstract

A new chimeric protein, named WT-CIIA, was designed by connecting the proline-rich decapeptide PPPVPPYSAG to the C-terminus of the alpha-spectrin SH3 domain through a natural twelve-residue linker to obtain a single-chain model that would imitate intramolecular SH3-ligand interaction. The crystal structure of this fusion protein was determined at 1.7 Å resolution. The asymmetric unit of the crystal contained two SH3 globules contacting with one PPPVPPY fragment located between them. The domains are related by the two-fold non-crystallographic axis and the ligand lies in two opposite orientations with respect to the conservative binding sites of SH3 domains.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Binding Sites
  • Crystallography, X-Ray
  • Ligands
  • Models, Molecular
  • Molecular Sequence Data
  • Peptides / chemistry*
  • Proline / chemistry*
  • Protein Folding
  • Spectrin / chemistry*
  • Spectrin / metabolism
  • src Homology Domains*

Substances

  • Ligands
  • Peptides
  • Spectrin
  • Proline