Actinomadura geliboluensis sp. nov., isolated from soil

Int J Syst Evol Microbiol. 2012 Aug;62(Pt 8):2011-2017. doi: 10.1099/ijs.0.036145-0. Epub 2011 Oct 21.

Abstract

A novel actinobacterium, strain A8036(T), isolated from soil, was investigated by using a polyphasic taxonomic approach. The organism formed extensively branched substrate hyphae that generated spiral chains of spores with irregular surfaces. The cell wall contained meso-diaminopimelic acid (type III) and cell-wall sugars were glucose, madurose, mannose and ribose. The predominant menaquinones were MK-9(H(6)) and MK-9(H(4)). The phospholipids were diphosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannosides. The major cellular fatty acids were iso-C(16:0), C(17:1)cis9, C(16:0), C(15:0) and 10-methyl C(17:0). Based on 16S rRNA gene sequence analysis, the closest phylogenetic neighbours of strain A8036(T) were Actinomadura meyerae DSM 44715(T) (99.23% similarity), Actinomadura bangladeshensis DSM 45347(T) (98.9%) and Actinomadura chokoriensis DSM 45346(T) (98.3%). However, DNA-DNA relatedness and phenotypic data demonstrated that strain A8036(T) could be clearly distinguished from the type strains of all closely related Actinomadura species. Strain A8036(T) is therefore considered to represent a novel species of the genus Actinomadura, for which the name Actinomadura geliboluensis sp. nov. is proposed. The type strain is A8036(T) ( = DSM 45508(T) = KCTC 19868(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification
  • Bacterial Typing Techniques
  • Carbohydrates / analysis
  • Cell Wall / chemistry
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Molecular Sequence Data
  • Phospholipids / analysis
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil / analysis
  • Soil Microbiology*
  • Turkey

Substances

  • Carbohydrates
  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Soil

Associated data

  • GENBANK/HQ157187