Isolation and characterization of microsatellite loci for Hibiscus aridicola (Malvaceae), an endangered plant endemic to the dry-hot valleys of Jinsha River in Southwest China

Int J Mol Sci. 2011;12(9):5698-704. doi: 10.3390/ijms12095698. Epub 2011 Sep 5.

Abstract

Hibiscus aridicola (Malvaceae) is an endangered ornamental shrub endemic to the dry-hot valleys of Jinsha River in southwest China. Only four natural populations of H. aridicola exist in the wild according to our field investigation. It can be inferred that H. aridicola is facing a very high risk of extinction in the wild and an urgent conservation strategy is required. By using a modified biotin-streptavidin capture method, a total of 40 microsatellite markers were developed and characterized in H. aridicola for the first time. Polymorphisms were evaluated in 39 individuals from four natural populations. Fifteen of the markers showed polymorphisms with two to six alleles per locus; the observed heterozygosity ranged from 0.19 to 0.72. These microsatellite loci would be useful tools for population genetics studies on H. aridicola and other con-generic species which are important to the conservation and development of endangered species.

Keywords: Hibiscus aridicola; SSR markers; endangered plant; population genetics; population structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alleles
  • Amplified Fragment Length Polymorphism Analysis
  • Conservation of Natural Resources / methods
  • DNA, Plant / analysis
  • DNA, Plant / genetics
  • Endangered Species*
  • Genetic Loci / genetics*
  • Genetics, Population / methods
  • Genotype
  • Hibiscus / genetics*
  • Hibiscus / growth & development
  • Microsatellite Repeats / genetics*
  • Polymorphism, Genetic

Substances

  • DNA, Plant