Non-homologous end-joining partners in a helical dance: structural studies of XLF-XRCC4 interactions

Biochem Soc Trans. 2011 Oct;39(5):1387-92, suppl 2 p following 1392. doi: 10.1042/BST0391387.

Abstract

XRCC4 (X-ray cross-complementation group 4) and XLF (XRCC4-like factor) are two essential interacting proteins in the human NHEJ (non-homologous end-joining) pathway that repairs DNA DSBs (double-strand breaks). The individual crystal structures show that the dimeric proteins are homologues with protomers containing head domains and helical coiled-coil tails related by approximate two-fold symmetry. Biochemical, mutagenesis, biophysical and structural studies have identified the regions of interaction between the two proteins and suggested models for the XLF-XRCC4 complex. An 8.5 Å (1 Å = 0.1 nm) resolution crystal structure of XLF-XRCC4 solved by molecular replacement, together with gel filtration and nano-ESI (nano-electrospray ionization)-MS results, demonstrates that XLF and XRCC4 dimers interact through their head domains and form an alternating left-handed helical structure with polypeptide coiled coils and pseudo-dyads of individual XLF and XRCC4 dimers at right angles to the helical axis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallization
  • DNA / chemistry*
  • DNA / genetics
  • DNA / metabolism
  • DNA Breaks, Double-Stranded
  • DNA End-Joining Repair*
  • DNA Ligases / metabolism
  • DNA Repair
  • DNA Repair Enzymes / chemistry*
  • DNA Repair Enzymes / genetics
  • DNA Repair Enzymes / metabolism
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / metabolism
  • Dimerization
  • Humans
  • Models, Molecular
  • Protein Binding
  • Protein Structure, Quaternary*
  • Protein Structure, Secondary*

Substances

  • DNA-Binding Proteins
  • NHEJ1 protein, human
  • XRCC4 protein, human
  • DNA
  • DNA Ligases
  • DNA Repair Enzymes