This study analyzed the concentration and stable nitrogen (δ(15)N) and oxygen (δ(18)O) isotopic compositions of water NO (3) (-) , as well as NO (3) (-) concentration and δ(15)N values of soils and manure-sourced fertilizers to assess pollution and variation in stream nitrate at the watershed of the Chi-Chia-Wan Stream (CCWS), a protected high-mountain stream in Central Taiwan. Results indicate a gully (G1) that contributes significantly high NO (3) (-) concentration water (up to 122 mg/L) to trunk water as the major pollution source of CCWS. The high NO (3) (-) concentration gully water has a close relationship with manure-sourced fertilizer with both having compatible enriched δ(15)N values. Results also indicate that water mixing over isotopic fractionation processes such as denitrification or assimilation is the major process accounting for variations in concentrations and isotopic values for stream NO (3) (-) . Incorporation of gully/tributary water of high NO (3) (-) concentration increases both the concentration and isotopic values of trunk water and vice versa for the incorporation of low NO (3) (-) concentration tributary water. Despite G1 contributing high NO (3) (-) concentration water to the trunk water of CCWS, the concentration of the trunk water is only slightly elevated and is still lower than the required water quality standard due to much lower drainage of the gully water compared to trunk water's runoff. In addition to gully or tributary water and rainwater, NO (3) (-) derived from soil is another important contributor to trunk water. The NO (3) (-) contribution of soil to trunk water is greater in summer than in winter. Additionally, NO (3) (-) concentrations in soil from ex-cultivated land are significantly lower than that in cultivated land. This means that NO (3) (-) contribution from ex-cultivated land soil to trunk water is small and demonstrates that the land-recovery plan that has been underway in the studied watershed for sometime is effective.