The focus of this article is to combine two main areas of research activities in freshwater ecosystems: the effect of inorganic pollutants on freshwater ecosystems and litter decomposition as a fundamental ecological process in streams. The decomposition of plant litter in aquatic systems as a main energy source in running water ecosystems proceeds in three distinct temporal stages of leaching, conditioning and fragmentation. During these stages metals and metalloids may be fixed by litter, its decay products and the associated organisms. The global-scale problem of contaminated freshwater ecosystems by metals and metalloids has led to many investigations on the acute and chronic toxicity of these elements to plants and animals as well as the impact on animal activity under laboratory conditions. Where sorption properties and accumulation/remobilization potential of metals in sediments and attached microorganisms are quite well understood, the combination of both research areas concerning the impact of higher trophic levels on the modification of sediment sorption conditions and the influence of metal/metalloid pollution on decomposition of plant litter mediated by decomposer community, as well as the effect of high metal load during litter decay on organism health under field conditions, has still to be elucidated. So far it was found that microbes and invertebrate shredder (species of the genera Gammarus and Asellus) have a significant influence on metal fixation on litter. Not many studies focus on the impact of other functional groups affecting litter decay (e.g. grazer and collectors) or other main processes in freshwater ecosystems like bioturbation (e.g. Tubifex, Chironomus) on metal fixation/release.
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