Like any other medical intervention, the orthodontic treatment may have, besides the positive effects, also unwanted secondary consequences. The aim of this study was to evaluate the changes present in dental hard tissue associated with orthodontic treatment. The stereo-microscopic ex vivo analysis was performed on two sets of maxillary first premolars undergoing orthodontic treatment for a long period of time (12 and 23 months); five teeth with other clinical situations were used as controls. By analyzing the teeth undergoing orthodontics, enamel color alterations were mainly found adjacent to the bracket, more pronounced in the gingival area, suggesting the need for a correct oral hygiene around it. Roughness was higher on the enamel surface corresponding to the bracket's base, aspect linked to the resign impregnation during bonding procedures. At the apical part, changes regarding contour, appearance and surface roughness were noticed. These modifications were suggestive for the presence of apical root resorption. The severity of root resorption was not correlated with the duration of treatment. In conclusion, through microscopic analysis changes that may be associated with orthodontic treatment have been observed in both crown and apical level.