Simple high-throughput annotation pipeline (SHAP)

Matthew Z DeMaere; Federico M Lauro; Torsten Thomas; Sheree Yau; Ricardo Cavicchioli

doi:10.1093/bioinformatics/btr411

Simple high-throughput annotation pipeline (SHAP)

Bioinformatics. 2011 Sep 1;27(17):2431-2. doi: 10.1093/bioinformatics/btr411. Epub 2011 Jul 19.

Authors

Matthew Z DeMaere¹, Federico M Lauro, Torsten Thomas, Sheree Yau, Ricardo Cavicchioli

Affiliation

¹ School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, NSW 2052, Australia. matt.demaere@unsw.edu.au

PMID: 21775307
DOI: 10.1093/bioinformatics/btr411

Abstract

Summary: SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups.

Availability: Source code is freely available under GPLv3 at https://sourceforge.net/projects/shap.

Contact: matt.demaere@unsw.edu.au; r.cavicchioli@unsw.edu.au.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Humans
Information Storage and Retrieval
Internet
Molecular Sequence Annotation / methods*
Sequence Analysis, DNA*
Software*