No evidence of viral genomes in whole-transcriptome sequencing of three melanoma metastases

Exp Dermatol. 2011 Sep;20(9):766-8. doi: 10.1111/j.1600-0625.2011.01312.x. Epub 2011 Jun 14.

Abstract

Several viruses are known to cause cancer, such as human herpes virus 8 in Kaposi sarcoma and human papilloma viruses in cervical cancer. Recently, Merkel cell polyoma virus (MCPyV) has been described in 80% of Merkel cell carcinomas (MCC). Similarly to MCC and Kaposi sarcoma, melanoma incidence is increased in immunosuppressed patients. We asked whether infection by known or yet unknown viruses may play a role in melanoma development as well. To detect viral sequences expressed in melanoma cells, we analysed three melanoma metastases by whole-transcriptome sequencing and digital transcriptome subtraction. None of the samples investigated harboured viral sequences. In contrast, artificial viral sequences and MCPyV transcripts used as a positive control for the bioinformatics analysis were detected. This renders it less likely that viruses are frequently involved in melanoma induction. A larger number of melanoma transcriptome sequencings are required to rule out viruses as a relevant pathogen.

Publication types

  • Letter
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Genome, Viral*
  • Humans
  • Melanoma / genetics
  • Melanoma / secondary*
  • Melanoma / virology*
  • Oncogenic Viruses / genetics
  • Oncogenic Viruses / isolation & purification
  • Transcriptome