Amino acid precursor supply in the biosynthesis of the RNA polymerase inhibitor streptolydigin by Streptomyces lydicus

J Bacteriol. 2011 Aug;193(16):4214-23. doi: 10.1128/JB.05062-11. Epub 2011 Jun 10.

Abstract

Biosynthesis of the hybrid polyketide-nonribosomal peptide antibiotic streptolydigin, 3-methylaspartate, is utilized as precursor of the tetramic acid moiety. The three genes from the Streptomyces lydicus streptolydigin gene cluster slgE1-slgE2-slgE3 are involved in 3-methylaspartate supply. SlgE3, a ferredoxin-dependent glutamate synthase, is responsible for the biosynthesis of glutamate from glutamine and 2-oxoglutarate. In addition to slgE3, housekeeping NADPH- and ferredoxin-dependent glutamate synthase genes have been identified in S. lydicus. The expression of slgE3 is increased up to 9-fold at the onset of streptolydigin biosynthesis and later decreases to ∼2-fold over the basal level. In contrast, the expression of housekeeping glutamate synthases decreases when streptolydigin begins to be synthesized. SlgE1 and SlgE2 are the two subunits of a glutamate mutase that would convert glutamate into 3-methylaspartate. Deletion of slgE1-slgE2 led to the production of two compounds containing a lateral side chain derived from glutamate instead of 3-methylaspartate. Expression of this glutamate mutase also reaches a peak increase of up to 5.5-fold coinciding with the onset of antibiotic production. Overexpression of either slgE3 or slgE1-slgE2 in S. lydicus led to an increase in the yield of streptolydigin.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acids / metabolism
  • Amino Acids / pharmacology*
  • Aminoglycosides / biosynthesis*
  • Aminoglycosides / pharmacology
  • Anti-Bacterial Agents / biosynthesis
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • DNA-Directed RNA Polymerases / antagonists & inhibitors*
  • Gene Expression Regulation, Bacterial / drug effects*
  • Molecular Sequence Data
  • Molecular Targeted Therapy
  • Mutagenesis, Insertional
  • RNA / metabolism
  • Reverse Transcriptase Polymerase Chain Reaction
  • Streptomyces / genetics
  • Streptomyces / metabolism*

Substances

  • Amino Acids
  • Aminoglycosides
  • Anti-Bacterial Agents
  • Bacterial Proteins
  • RNA
  • streptolydigin
  • DNA-Directed RNA Polymerases