Whole-genome analysis reveals the complex evolutionary dynamics of Kenyan G2P[4] human rotavirus strains

J Gen Virol. 2011 Sep;92(Pt 9):2201-2208. doi: 10.1099/vir.0.033001-0. Epub 2011 May 25.

Abstract

Although G2P[4] rotaviruses are common causes of acute childhood diarrhoea in Africa, to date there are no reports on whole genomic analysis of African G2P[4] strains. In this study, the nearly complete genome sequences of two Kenyan G2P[4] strains, AK26 and D205, detected in 1982 and 1989, respectively, were analysed. Strain D205 exhibited a DS-1-like genotype constellation, whilst strain AK26 appeared to be an intergenogroup reassortant with a Wa-like NSP2 genotype on the DS-1-like genotype constellation. The VP2-4, VP6-7, NSP1, NSP3 and NSP5 genes of strain AK26 and the VP2, VP4, VP7 and NSP1-5 genes of strain D205 were closely related to those of the prototype or other human G2P[4] strains. In contrast, their remaining genes were distantly related, and, except for NSP2 of AK26, appeared to originate from or share a common origin with rotavirus genes of artiodactyl (ruminant and camelid) origin. These observations highlight the complex evolutionary dynamics of African G2P[4] rotaviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Child, Preschool
  • Cluster Analysis
  • Evolution, Molecular*
  • Genome, Viral*
  • Humans
  • Infant
  • Infant, Newborn
  • Kenya
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Viral / genetics*
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification
  • Rotavirus Infections / virology*
  • Sequence Analysis, DNA
  • Viral Proteins / genetics

Substances

  • RNA, Viral
  • Viral Proteins

Associated data

  • GENBANK/JF304915
  • GENBANK/JF304916
  • GENBANK/JF304917
  • GENBANK/JF304918
  • GENBANK/JF304919
  • GENBANK/JF304920
  • GENBANK/JF304921
  • GENBANK/JF304922
  • GENBANK/JF304923
  • GENBANK/JF304924
  • GENBANK/JF304925
  • GENBANK/JF304926
  • GENBANK/JF304927
  • GENBANK/JF304928
  • GENBANK/JF304929
  • GENBANK/JF304930
  • GENBANK/JF304931
  • GENBANK/JF304932
  • GENBANK/JF304933
  • GENBANK/JF304934
  • GENBANK/JF304935
  • GENBANK/JF304936