Understanding the impact of the P-loop conformation on kinase selectivity

J Chem Inf Model. 2011 Jun 27;51(6):1199-204. doi: 10.1021/ci200153c. Epub 2011 May 24.

Abstract

This work addresses the link between selectivity and an unusual, folded conformation for the P-loop observed initially for MAP4K4 and subsequently for other kinases. Statistical and computational analyses of our crystal structure database demonstrate that inhibitors that induce the P-loop folded conformation tend to be more selective, especially if they take advantage of this specific conformation by interacting more favorably with a conserved Tyr or Phe residue from the P-loop.

Publication types

  • Letter

MeSH terms

  • Databases, Protein
  • Extracellular Signal-Regulated MAP Kinases / antagonists & inhibitors
  • Extracellular Signal-Regulated MAP Kinases / chemistry
  • Extracellular Signal-Regulated MAP Kinases / metabolism*
  • Models, Molecular*
  • Protein Conformation
  • Protein Folding
  • Protein Kinase Inhibitors / chemistry
  • Protein Kinase Inhibitors / pharmacology
  • Substrate Specificity

Substances

  • Protein Kinase Inhibitors
  • Extracellular Signal-Regulated MAP Kinases
  • Mapk4 protein, rat