Rapid HCP5 single-nucleotide polymorphism genotyping: a simple allele-specific PCR method for prediction of hypersensitivity reaction to Abacavir

Clin Chim Acta. 2011 Jul 15;412(15-16):1382-4. doi: 10.1016/j.cca.2011.04.010. Epub 2011 Apr 14.

Abstract

Background: The most important factor limiting the success of an antiretroviral therapy is toxicity. The HLA-B*5701 allele is predictive of hypersensitivity reaction to Abacavir, and this gene is in a perfect linkage disequilibrium with the rs2395029 SNP present in the HCP5 gene.

Methods: Genomic DNA was extracted from blood obtained from 201 unrelated healthy Argentinean volunteers. The DNA was subjected to an allele-specific PCR method. Sequencing was performed to validate the test results.

Results: We were successful to amplify specific fragment of interest from the DNA samples. The method is easy, specific and reproducible.

Conclusions: The application of this methodology is a rapid and simple method to detect the HCP5 polymorphism (rs2395029) previous to administration of Abacavir in patients with HIV infection.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Alleles
  • Anti-HIV Agents / adverse effects*
  • Dideoxynucleosides / adverse effects*
  • Drug Hypersensitivity / blood
  • Drug Hypersensitivity / genetics*
  • Female
  • Genotype
  • Humans
  • Major Histocompatibility Complex / genetics*
  • Male
  • Middle Aged
  • Polymerase Chain Reaction
  • Polymorphism, Single Nucleotide / genetics*
  • Predictive Value of Tests
  • RNA, Long Noncoding
  • RNA, Untranslated
  • Reference Values
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Young Adult

Substances

  • Anti-HIV Agents
  • Dideoxynucleosides
  • HCP5 long noncoding RNA, human
  • RNA, Long Noncoding
  • RNA, Untranslated
  • abacavir