pmoA Primers for detection of anaerobic methanotrophs

Appl Environ Microbiol. 2011 Jun;77(11):3877-80. doi: 10.1128/AEM.02960-10. Epub 2011 Apr 1.

Abstract

Published pmoA primers do not match the pmoA sequence of "Candidatus Methylomirabilis oxyfera," a bacterium that performs nitrite-dependent anaerobic methane oxidation. Therefore, new pmoA primers for the detection of "Ca. Methylomirabilis oxyfera"-like methanotrophs were developed and successfully tested on freshwater samples from different habitats. These primers expand existing molecular tools for the study of methanotrophs in the environment.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria, Anaerobic / genetics
  • Bacteria, Anaerobic / isolation & purification*
  • Bacteria, Anaerobic / metabolism*
  • Bacterial Proteins / genetics*
  • Bacteriological Techniques / methods
  • DNA Primers / genetics*
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Fresh Water / microbiology
  • Methane / metabolism*
  • Molecular Sequence Data
  • Polymerase Chain Reaction / methods*
  • Sequence Analysis, DNA

Substances

  • Bacterial Proteins
  • DNA Primers
  • DNA, Bacterial
  • Methane

Associated data

  • GENBANK/HQ698926
  • GENBANK/HQ698927
  • GENBANK/HQ698928
  • GENBANK/HQ698929
  • GENBANK/HQ698930
  • GENBANK/HQ698931
  • GENBANK/HQ698932
  • GENBANK/HQ698933
  • GENBANK/HQ698934
  • GENBANK/HQ698935
  • GENBANK/HQ698936
  • GENBANK/HQ698937