Proton NMR studies of apo-neocarzinostatin from Streptomyces carzinostaticus. Sequence-specific assignment and secondary structure

Eur J Biochem. 1990 Jun 20;190(2):263-71. doi: 10.1111/j.1432-1033.1990.tb15571.x.

Abstract

The sequence-specific resonance assignment of apo-neocarzinostatin from Streptomyces carzinostaticus was carried out from two-dimensional proton-NMR spectra. The assignments were obtained for the backbone protons of 111 of the 113 residues of the protein, missing the two C alpha H of one glycine but including 3 of the 4 prolines. The majority of side chain protons were also assigned. The secondary structure derived from the analysis of sequential connections corresponds to ten beta-strands separated by clearly identified loops and turns. Inter-strand connectivities and slowly exchanging amide protons confirm the presence of the two disulfide bridges from Cys37 to Cys47 and from Cys88 to Cys93 and indicate a global folding similar to that of the similar proteins, actinoxanthin and macromomycin, for which crystallographic data are available.

MeSH terms

  • Alanine
  • Amino Acid Sequence
  • Amino Acids / analysis
  • Antibiotics, Antineoplastic / isolation & purification*
  • Glycine
  • Leucine
  • Magnetic Resonance Spectroscopy / methods
  • Molecular Sequence Data
  • Protein Conformation
  • Solutions
  • Streptomyces / analysis*
  • Threonine
  • Valine
  • Zinostatin / isolation & purification*

Substances

  • Amino Acids
  • Antibiotics, Antineoplastic
  • Solutions
  • Threonine
  • Zinostatin
  • Leucine
  • Valine
  • Alanine
  • Glycine