Wheat (Triticum aestivum L.) breeding programs are currently developing varieties that are free of amylose (waxy wheat), as well as genetically intermediate (partial waxy) types. Successful introduction of waxy wheat varieties into commerce is predicated on a rapid methodology at the commodity point of sale that can test for the waxy condition. Near-infrared (NIR) reflectance spectroscopy, one such technology, was applied to a diverse set of hard winter (hexaploid) wheat breeders' lines representing all eight genotypic combinations of alleles at the wx-A1, wx-B1, and wx-D1 loci. These loci encode granule-bound starch synthase, the enzyme responsible for amylose synthesis. Linear discriminant analysis of principal components scores 1-4 was successful in identifying the fully waxy samples at typically greater than 90% accuracy; however, accuracy was reduced for partial and wild-type genotypes. It is suggested that the spectral sensitivity to waxiness is due to (1) the lipid-amylose complex which diminishes with waxiness, (2) physical differences in endosperm that affect light scatter, or (3) changes in starch crystallinity.