Natribacillus halophilus gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium isolated from soil

Int J Syst Evol Microbiol. 2012 Feb;62(Pt 2):289-294. doi: 10.1099/ijs.0.028506-0. Epub 2011 Mar 11.

Abstract

A moderately halophilic and alkalitolerant bacterium, designated strain HN30(T), was isolated from garden soil in Japan. Cells of strain HN30(T) were motile, endospore-forming, aerobic, rod-shaped and gram-positive, and contained A1γ meso-diaminopimelic acid-type murein. Growth occurred in 7-23 % (w/v) NaCl (optimum, 10-15 %, w/v), at pH 6.5-10.0 (optimum, pH 8.0-8.5) and at 20-40 °C (optimum, 30 °C). The isoprenoid quinone was menaquinone-7. The polar lipids were phosphatidylglycerol and diphosphatidylglycerol. The major cellular fatty acids were anteiso-C(15 : 0), anteiso-C(17 : 0), iso-C(16 : 0) and C(16 : 0). The DNA G+C content of strain HN30(T) was 47 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain HN30(T) was most closely related to Geomicrobium halophilum BH1(T) (93 % sequence similarity). 16S rRNA gene sequence similarities with other recognized species were less than 89 %. Phylogenetic and phenotypic characteristics indicated that strain HN30(T) represents a novel species in a new genus, for which the name Natribacillus halophilus gen. nov., sp. nov. is proposed; the type strain is HN30(T) ( = JCM 15649(T) = DSM 21771(T)).

MeSH terms

  • Bacillaceae / classification*
  • Bacillaceae / genetics
  • Bacillaceae / isolation & purification
  • Bacillaceae / physiology*
  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / analysis
  • DNA, Ribosomal / analysis
  • Fatty Acids / analysis
  • Genes, rRNA
  • Hydrogen-Ion Concentration
  • Lipids / analysis
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phenotype
  • Phylogeny
  • Quinones / analysis
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride* / pharmacology
  • Soil Microbiology*
  • Species Specificity

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Lipids
  • Quinones
  • RNA, Ribosomal, 16S
  • Sodium Chloride

Associated data

  • GENBANK/AB449109
  • GENBANK/AB571873
  • GENBANK/AB571874