Emissions from combustion of coal, wood and cowdung cakes in domestic cookstoves were sampled through a Stack Monitor on Glass Fibre thimbles. 16 PAH compounds were quantified in the samples extracted in dichloromethane by Gas Chromatography using FID detector. The toxic potencies of the quantified PAHs were determined by Toxicity Equivalence (TEF) Approach and their mutagenecities were tested by using Ames Plate Incorporation Method. All the 16 PAHs were determined in the emission of wood, including genotoxic compounds: carcinogens (BaA, Chy, BbF, BkF, BaP, DbA and IP) and co-carcinogens (Fla, Pyr, BghiP). In coal smoke, only 12 compounds were detected, while in cowdung cake 15 PAHs were detected except Phenanthrene. Emission factors on a fuel weight basis are highest for cowdung cake (120.23 mg/kg), followed by wood (48.97 mg/kg) and coal (28.85 mg/kg). Most of the contribution to the total PAH concentrations was from the high molecular weight compounds. Considering the genotoxic PAHs, the emission factor ranking order was from cow dung cake (115.85 mg/kg) to wood (43.03 mg/kg) and lowest for coal fuel (25.97 mg/kg). The emission factor for BaP was highest for cowdung cake (78.83 mg/kg) followed by coal (5.53 mg/kg) and wood fuel (4.47 mg/kg). Calculation of toxic potencies reveals that the carcinogenic contribution from low molecular weight PAHs is relatively much lower than high molecular weight PAHs for each tested fuel. Cow dung cake extracts did not show mutagenic activity in the Ames Salmonella test probably due to lower concentration of the direct-mutagens like Pyr, Chy. In contrast, the extracts of coal and wood had higher concentrations of direct-mutagens like Pyr, Chy, so positive results were obtained.