Aspartyl-tRNA synthetase from Escherichia coli: cloning and characterisation of the gene, homologies of its translated amino acid sequence with asparaginyl- and lysyl-tRNA synthetases

Nucleic Acids Res. 1990 Dec 11;18(23):7109-18. doi: 10.1093/nar/18.23.7109.

Abstract

By screening of an Escherichia coli plasmidic library using antibodies against aspartyl-tRNA synthetase (AspRS) several clones were obtained containing aspS, the gene coding for AspRS. We report here the nucleotide sequence of aspS and the corresponding primary structure of the aspartyl-tRNA synthetase, a protein of 590 amino acid residues with a Mr 65,913, a value in close agreement with that observed for the purified protein. Primer extension analysis of the aspS mRNA using reverse transcriptase located its 5'-end at 94 nucleotides upstream of the translation initiation AUG; nuclease S1 analysis located the 3'-end at 126 nucleotides downstream of the stop codon UGA. Comparison of the DNA-derived protein sequence with known aminoacyl-tRNA sequences revealed important homologies with asparaginyl- and lysyl-tRNA synthetases from E.coli; more than 25% of their amino acid residues are identical, the homologies being distributed preferencially in the first part and the carboxy-terminal end of the molecule. Mutagenesis directed towards a consensus tetrapeptide (Gly-Leu-Asp-Arg) and the carboxy-terminal end showed that both domains could be implicated in catalysis as well as in ATP binding.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amino Acyl-tRNA Synthetases / genetics
  • Amino Acyl-tRNA Synthetases / metabolism
  • Aspartate-tRNA Ligase / genetics*
  • Aspartate-tRNA Ligase / isolation & purification
  • Aspartate-tRNA Ligase / metabolism
  • Base Sequence
  • Cloning, Molecular
  • Codon
  • Escherichia coli / enzymology
  • Escherichia coli / genetics*
  • Genes, Bacterial
  • Lysine-tRNA Ligase / genetics
  • Lysine-tRNA Ligase / metabolism
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Protein Biosynthesis
  • RNA, Transfer, Amino Acyl*
  • Restriction Mapping
  • Sequence Alignment
  • Sequence Homology, Nucleic Acid

Substances

  • Codon
  • RNA, Transfer, Amino Acyl
  • Amino Acyl-tRNA Synthetases
  • Aspartate-tRNA Ligase
  • asparaginyl-tRNA synthetase
  • Lysine-tRNA Ligase

Associated data

  • GENBANK/X53863